Publications

  • Jordan CY, Lohse K, Turner F, Thomson M, Gharbi K, Ennos RA. 2017. Maintaining their genetic distance; limited gene flow between widely hybridising species of Geum with contrasting mating systems. submitted

  • Beeravolu CR, Hickerson MJ, Frantz LAF, Lohse K. 2016. Approximate likelihood inference of complex population histories and recombination from multiple genomes, bioArXiv

  • Nuernberger B, Lohse K, Fijarczyk A, Szymura, JM, Blaxter M. 2016. Para-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): inference from transcriptome-wide coalescence analyses, Evolution, 70 (8): 1803–1818

  • Lohse K, Chmelik M, Martin SH, Barton NH. 2016. Efficient strategies for calculating blockwise likelihoods under the coalescent, Genetics, 202 (2): 775-786

  • Lohse K, Ross L. 2015. What haplodiploids can teach us about hybridization and speciation, Molecular Ecology,  4 (20): 5075-5077

  • Bunnefeld L, Frantz LAF, Lohse K. 2015. Inferring Bottlenecks from Genome-Wide Samples of Short Sequence Blocks, Genetics, 201 (3): 1157-1169

  • Lohse K, Clarke M, Ritchie MG, Etges WJ. 2015. Genome-wide tests for introgression between cactophilic Drosophila implicate a role of inversions during speciation, Evolution, 69 (5): 1178–1190

  • Frantz LAF, Madsen O, Megens H-J, Groenen MAM, Lohse K. 2014. Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island Southeast Asian Sus species during the Plio-Pleistocene climatic fluctuations, Molecular Ecology, 23(22): 5566–5574

  • Lohse K, Frantz LAF. 2014. Maximum likelihood evidence for Neandertal admixture in Eurasia from three genome. Genetics 196 (4): 1241-1251

  • Hearn J, Stone GN, Nicholls JA, Barton N, Lohse K. 2014. Likelihood-based inference of population history from low coverage de novo genome assemblies, Molecular Ecology, 23 (1): 198-211

  • Melika G, Tang C-T, Sinclair F, Yang M-M, Lohse K, Hearn J, Nicholls JA, Stone GN. 2013. A new genus of oak gallwasp, Cyclocynips Melika, Tang & Sinclair (Hymenoptera: Cynipidae, Cynipini), with descriptions of two new species from Taiwan, Zootaxa , 3630 (3): 534-548

  • Lohse K, Barton N, Melika G, Stone GN. 2012. A likelihood based comparison of population histories in a parasitoid guild, Molecular Ecology, 22(18): 4605-4617

  • Smith G, Lohse K, Etges WJ, Ritchie MG. 2012. Model-based comparisons of phylogeographic scenarios resolve the intraspecific divergence of cactophilic Drosophila mojavensis, Molecular Ecology, 21: 3293-3307

  • Stone* GN, Lohse* K, Nicholls JA, Sinclair F, Schönrogge K, Csóka G, Melika G, Nieves-Aldrey J-N, Pujade-Villar J, Tavakoli M, Askew RR, Hickerson* MJ. 2012. Reconstructing community assembly in time and space reveals enemy escape in a western Palearctic insect community, Current Biology, 22 (6), R182-183

  • Lohse K, Harrison R, Barton N. 2011. A general method for calculating likelihoods under the coalescent process, Genetics, 189 (3): 977-987

  • Lohse K, Sharanowski B, Blaxter M, Nicholls JA, Stone GN. 2011. Developing EPIC markers for chalcidoid Hymenoptera from EST and genomic data. Molecular Ecology Resources, 11, 521-529

  • Lohse K, Nicholls JA, Stone GN. 2011. Inferring the colonisation of a mountain range – nunatak survival in high alpine ground beetles. Molecular Ecology, 20: 394-408

  • Lohse K, Sharanowski B, Stone GN. 2010. Quantifying the Pleistocene history of the oak gall parasitoid Cecidostiba fungosa using twenty intron loci. Evolution, 64 (9): 2664-2681

  • Kaatinen R, Stone GN, Hearn J, Lohse K, Roslin T. 2010. Revealing secret liaisons: DNA bar-coding changes our understanding of food webs. Entomologial Ecology, 35 (5): 623-638

  • Lohse K. 2009. Can barcodes be used to delimit species? A response to Pons et al. (2006). Systematic Biology, 58 (4): 439-442

  • Lohse K, Kelleher J. 2009. Measuring the degree of starshape in genealogies – summary statistics and demographic inference. Genetics Research, 91: 281-292

  • Lohse K, Gutierrez A, Kaltz O. 2007. Experimental evolution of resistance in Paramecium caudatum against the bacterial parasite Holospora undulata. Evolution, 60 (6): 1177-1186